Plant Transcription Factors by Unknown

Author:Unknown
Language: eng
Format: epub
ISBN: 9781493986576
Publisher: Springer New York

5.Check the reports of mapping rates: $ cat ./*_out/align_summary.txt

6.Count mapped reads and merge the count data of all samples to generate files named <count_data.txt> (see Note 19 ):$ featureCounts -s 1 -t exon -g gene_id -a<working_directory>/genome/<gene_annotation_GTF> -o count_data.txt ./*_out/accepted_hits.bam

7.Add the sample name, remove unnecessary columns, and convert into a csv file <count_data.csv>.

8. $ awk 'NR>1' count_data.txt | cut --complement -f 2,3,4,5,6 | tr -s '\t' ','> count_data.csv

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